| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 525 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 525 |
| Dauin-Apo I. | Sea/Bay/Gulf | native | 127519 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 525 |
| Indian Ocean | Sea/Bay/Gulf | native | 525 |
| Indonesian Sea | Sea/Bay/Gulf | native | 525 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| Leyte Gulf | Sea/Bay/Gulf | native | 31411 |
| Narra | Sea/Bay/Gulf | native | 114805 |
| North Australian Shelf | Sea/Bay/Gulf | native | 525 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 525 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 525 |
| Pacific Ocean | Sea/Bay/Gulf | native | 525 |
| San Pedro Bay | Sea/Bay/Gulf | native | 46241 |
| Sogod Bay | Sea/Bay/Gulf | native | 46392 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 525 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 31075 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 42419 |
| Tayabas Bay | Sea/Bay/Gulf | native | 47588 |
| Yellow Sea | Sea/Bay/Gulf | native | 525 |