| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agnébi | River (basin) | native | 57414 |
| Aruwimi | River (basin) | native | 106290 |
| Bandama | River (basin) | native | 57414 |
| Bia | River (basin) | native | 272 |
| Boubo | River (basin) | native | 57414 |
| Casamance | River (basin) | native | 33587 |
| Cavally | River (basin) | native | 13331 |
| Cess | River (basin) | native | 57414 |
| Comoé | River (basin) | native | 57414 |
| Congo | River (basin) | native | 81650 |
| Corubal | River (basin) | native | 57414 |
| Cross | River (basin) | native | 81650 |
| Ébrié | Lagoon | native | 57414 |
| Ethiopian | Zoogeographic realm | endemic | 83464 |
| Fatala | River (basin) | native | 57414 |
| Gambia | River (basin) | native | 57414 |
| Géba | River (basin) | native | 13331 |
| Great Scarcies | River (basin) | native | 57414 |
| Inner Niger Delta | River (basin) | native | 57414 |
| Itimbiri | River (basin) | native | 106290 |
| Kasai | River (basin) | native | 83464 |
| Kogon | River (basin) | native | 57414 |
| Komo | River (basin) | native | 81650 |
| Konkouré | River (basin) | native | 57414 |
| Kouilou-Niari | River (basin) | native | 81650 |
| Kwango | River (basin) | native | 83464 |
| Léfini-Likouala | River (basin) | native | 83464 |
| Little Scarcies | River (basin) | native | 57414 |
| Lofa | River (basin) | native | 13331 |
| Lomami | River (basin) | native | 106245 |
| Lower Congo | River (basin) | native | 45434 |
| Lulonga | River (basin) | native | 83464 |
| Middle Congo | River (basin) | native | 4910 |
| Moa | River (basin) | native | 13331 |
| Mono | River (basin) | native | 28663 |
| Muni | River (basin) | native | 81650 |
| Ngove | River (basin) | native | 81650 |
| Niger | River (basin) | native | 57414 |
| Niger Delta | River (basin) | native | 57414 |
| Nkomi | River (basin) | native | 81650 |
| Nyanga | River (basin) | native | 81650 |
| Ogowe | River (basin) | native | 81650 |
| Ogun | River (basin) | native | 13331 |
| Ouémé | River (basin) | native | 57414 |
| Pampana | River (basin) | native | 57414 |
| Pool Malebo | Lake | native | 41585 |
| Rio del Rey | River (basin) | native | 81650 |
| Rokel | River (basin) | native | 57414 |
| Ruki | River (basin) | native | 41580 |
| Saint John | River (basin) | native | 57414 |
| Saint Paul | River (basin) | native | 13331 |
| San Pedro | River (basin) | native | 57414 |
| Sanaga | River (basin) | native | 81650 |
| Sangha | River (basin) | native | 83464 |
| Sankuru | River (basin) | native | 83464 |
| Sassandra | River (basin) | native | 272 |
| Senegal | River (basin) | native | 57414 |
| Sewa | River (basin) | native | 57414 |
| Sio | River (basin) | native | 57414 |
| Tano | River (basin) | native | 83625 |
| Ubangui | River (basin) | native | 45441 |
| Uélé | River (basin) | native | 83464 |
| Upper Niger | River (basin) | native | 57414 |
| Volta | River (basin) | native | 57414 |
| Wouri | River (basin) | native | 81650 |