| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Bay of Bengal | Sea/Bay/Gulf | native | 11441 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 5978 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Erh-jen-shi | Sea/Bay/Gulf | native | 43515 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Oman | Sea/Bay/Gulf | native | 11441 |
| Indian Ocean | Sea/Bay/Gulf | native | 9558 |
| Indonesian Sea | Sea/Bay/Gulf | native | 5978 |
| Lu-kang | Sea/Bay/Gulf | native | 43515 |
| North Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Ocean | Sea/Bay/Gulf | native | 5978 |
| Peng-hu Island | Sea/Bay/Gulf | native | 43515 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 3322 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 125407 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 280 |
| Tung-hsiao | Sea/Bay/Gulf | native | 43515 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |