| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agnébi | River (basin) | native | 13331 |
| Bandama | River (basin) | native | 272 |
| Benue | River (basin) | native | 123791 |
| Bia | River (basin) | native | 272 |
| Casamance | River (basin) | native | 28587 |
| Cavally | River (basin) | native | 13331 |
| Cess | River (basin) | native | 123791 |
| Chad | River (basin) | native | 53405 |
| Comoé | River (basin) | native | 123791 |
| Congo | River (basin) | questionable | 5644 |
| Corubal | River (basin) | native | 13331 |
| Cross | River (basin) | native | 13331 |
| Ébrié | Lagoon | native | 28587 |
| Ethiopian | Zoogeographic realm | endemic | 5644 |
| Fatala | River (basin) | native | 28587 |
| Gambia | River (basin) | native | 13331 |
| Géba | River (basin) | native | 13331 |
| Great Scarcies | River (basin) | native | 13331 |
| Kainji | Lake | native | 123791 |
| Kogon | River (basin) | native | 13331 |
| Konkouré | River (basin) | native | 13331 |
| Kwando | River (basin) | native | 13332 |
| Little Scarcies | River (basin) | native | 13331 |
| Lofa | River (basin) | native | 13331 |
| Moa | River (basin) | native | 13331 |
| Mono | River (basin) | native | 123791 |
| Niger | River (basin) | native | 53405 |
| Nile | River (basin) | native | 28714 |
| Ogowe | River (basin) | questionable | 51193 |
| Ogun | River (basin) | native | 13331 |
| Okavango | River (basin) | native | 27501 |
| Ouémé | River (basin) | native | 123791 |
| Pampana | River (basin) | native | 123791 |
| Pra | River (basin) | native | 13331 |
| Rokel | River (basin) | native | 13331 |
| Saint John | River (basin) | native | 13331 |
| Saint Paul | River (basin) | native | 13331 |
| Saloum | River (basin) | native | 28587 |
| Sanaga | River (basin) | native | 51193 |
| Sangha | River (basin) | misidentification | 51193 |
| Sassandra | River (basin) | native | 13331 |
| Senegal | River (basin) | native | 123791 |
| Sewa | River (basin) | native | 13331 |
| Tano | River (basin) | native | 13331 |
| Volta | River (basin) | native | 30488 |
| White Nile | River (basin) | native | 120561 |
| Zambezi | River (basin) | native | 13332 |