| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Arabian Sea | Sea/Bay/Gulf | native | 2295 |
| Bay of Bengal | Sea/Bay/Gulf | native | 5736 |
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Dauin-Apo I. | Sea/Bay/Gulf | native | 127519 |
| Gulf of Aden | Sea/Bay/Gulf | native | 2295 |
| Gulf of Oman | Sea/Bay/Gulf | native | 2295 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 2295 |
| Indian Ocean | Sea/Bay/Gulf | native | 2295 |
| Indonesian Sea | Sea/Bay/Gulf | native | 2295 |
| Lanuza Bay | Sea/Bay/Gulf | native | 104756 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 2295 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 2295 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 2295 |
| Pacific Ocean | Sea/Bay/Gulf | native | 2295 |
| Persian Gulf | Sea/Bay/Gulf | native | 2295 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| San Pedro Bay | Sea/Bay/Gulf | native | 46241 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 2295 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 42419 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| Yellow Sea | Sea/Bay/Gulf | native | 2295 |