| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Bandama | River (basin) | native | 272 |
| Benue | River (basin) | native | 13331 |
| Chad | River (basin) | native | 3203 |
| Comoé | River (basin) | native | 272 |
| Ébrié | Lagoon | native | 28587 |
| Ethiopian | Zoogeographic realm | endemic | 3203 |
| Gambia | River (basin) | native | 3203 |
| Géba | River (basin) | native | 13331 |
| Mono | River (basin) | native | 13331 |
| Niger | River (basin) | native | 13331 |
| Nile | River (basin) | native | 3203 |
| Senegal | River (basin) | native | 3203 |
| Upper Niger | River (basin) | native | 81274 |
| Volta | River (basin) | native | 3203 |
| White Nile | River (basin) | native | 120561 |