| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Hsiao-liu-chiu | Sea/Bay/Gulf | native | 48451 |
| Indian Ocean | Sea/Bay/Gulf | native | 12419 |
| Indonesian Sea | Sea/Bay/Gulf | native | 12419 |
| Pacific Ocean | Sea/Bay/Gulf | native | 12419 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 120711 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 393 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| Verde Island Passage | Sea/Bay/Gulf | native | 6956 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |