| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Chiku River | River (basin) | native | 36073 |
| East China Sea | Sea/Bay/Gulf | native | 11230 |
| Pacific Ocean | Sea/Bay/Gulf | native | 4537 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| San Miguel Bay | Sea/Bay/Gulf | native | 43275 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 31075 |
| Southern Palawan | Sea/Bay/Gulf | native | 9494 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 280 |
| Tsengwen River | River (basin) | native | 36073 |
| Yellow Sea | Sea/Bay/Gulf | native | 4537 |